rs27690799 SNP Detail

Summary

• ID
  rs27690799
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:9664705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTAAATG GGATTTCTCT
  AACAGCCTTT TGGACTCTGT ACTTGCTGGG GATGCAGAAG CAGCATATTG AAGATCCAGG
  CCAAGTCCTT CTCAGGACAT TAAATCAGTA GCTGGAAGAG CATCAAAAGA GCACATTGTA
  TCTGAGCTTT ACTAAGATAC AGAATGTTAC AAATCGCTAA GAGATCAGCT GGCAAATAGC
  W
  ACAGGAAGGC GGCTGTACAA ATGAAACACT TACAAAACTG TATCTAGTGC TTCAGAAAGT
  TACAATAGAG TCTACTGCAA AAGGAATCCT ATATTTGAAA CAAACATGTT ACAGAGTAAC
  AGTAGTGCAG CTTGTCAAGC AAGATGGGTA CTTTGTATTC TCTCAGGTTT TTCACTCTCA
  CCATCAGCAT GGACACGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37855028	NES08647878	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27690799					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37855028	NES08647878	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9664705 () rs orientation: forward

Symbol	Name	Function Class
Asph	aspartate-beta-hydroxylase	Intron
Rr588728	regulatory region 588728	896 bp distal
Rr588729	regulatory region 588729	81 bp proximal
Rr588730	regulatory region 588730	704 bp proximal
Rr588731	regulatory region 588731	1118 bp proximal