rs27690346 SNP Detail

Summary

• ID
  rs27690346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:7986809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTGAGT AGGTACAGCA
  TGGAATCAAA TACAGAATGT CAAAATGGTT TCCATTAACT ATGCACATTC GCGCCGCTTC
  CCCTAATGGC CACGTTTTTG TTCTTCTTTC TTCATCTTTG CGTCTATAAG ATGAAGTGAT
  TGAGTTGATG TAACTGAAAA GTGCGTGGGG AAGGGAAAGA GGAAATGACA AAAGCATCAC
  R
  CCGCAATTCC ACCCACATGC TTTACTCTGT AATGAAGTTT AATAACGACA CAAAGTGACT
  GCAGTTAAAC ATCAGTCATC TCGGCAATTG TACTTAATGT GAGTATCTCA TACCCAGTAA
  TGTTTTATAG AAACATGGCA GGGACTGTGG TCTACATTGA GCTGAAATGT CATAATGAAA
  TCTTAACTAG ATACTATTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37862169	NES08668632	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27690346					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37862169	NES08668632	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:7986809 () rs orientation: forward

Symbol	Name	Function Class
Rr376053	regulatory region 376053	within coordinates
Rr588484	regulatory region 588484	1681 bp distal
Rr588485	regulatory region 588485	1154 bp proximal