rs27690340 SNP Detail

Summary

• ID
  rs27690340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:7987734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCTCCCC TACCCCGCAG
  CAGTCACTGC CCACATCAAA AAGGCTTAGC CAGCCTCATG AACCTGTTGT AATTTCAAAA
  TCACATCATA AAAGAAAGAT AGTGGAACAT TTATTTTCAC TTCTGATTTT CCTATCTTCC
  TAAATGTAGT AGAATGAAAG AAAGATTGAG ACAACGCTGC TGCCCATAGC CCAGCATTTC
  Y
  CTAGTACCCA CAGCTCCTTA AAGAGTGATA CAGAGCTGGT AAGAGCAACA GACAGAAGTA
  AGACACTCCT TTTGCTGTGT GTATATTTGG CTAACTTTCC TCCCCAACTA ACTCTCAATA
  TTTTCCTTGC TAATGCTGGT TCCTGGGGTA TTTTATATTT ATATTTCAAC ATTTTTCACA
  AATGTTACTA AGCATATCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37862163	NES08668639	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27690340					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37862163	NES08668639	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:7987734 () rs orientation: forward

Symbol	Name	Function Class
Rr376053	regulatory region 376053	within coordinates
Rr588485	regulatory region 588485	229 bp proximal