rs27690339 SNP Detail

Summary

• ID
  rs27690339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:7988025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAACTTTCC TCCCCAACTA
  ACTCTCAATA TTTTCCTTGC TAATGCTGGT TCCTGGGGTA TTTTATATTT ATATTTCAAC
  ATTTTTCACA AATGTTACTA AGCATATCTG AGTTCATGAA ACATCTAGGA CATTTAGTCT
  TGCCACCAGA TGGCAGTGGA ATACTATTCA GATTTTACAA GGAAACCAAT GGGCCCAGGA
  R
  ACTTTGGATA AGTACTACCC ACTATGCTAT GCCCAGAAAT GGCATGTCTT TTCTATGAAT
  ATTCAAGAAC AATATATTTG TCAAAGGATC TATTGCTATA GCGAAAGATG TGTTTAGCTA
  CTGTTAGTAC TGTTACACTA CAGCTACATA TCAAAGCATA GGAATTGTTT GAATTCATGT
  TTTATTGTCA ATCACAGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37862162	NES08668642	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27690339					SNP	A	A	A	A	A	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37862162	NES08668642	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:7988025 () rs orientation: forward

Symbol	Name	Function Class
Rr376053	regulatory region 376053	within coordinates
Rr588485	regulatory region 588485	41 bp distal