rs27689475 SNP Detail

Summary

• ID
  rs27689475
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:6562575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCAAAGG CAAGAGAGTC
  TAGACTAGGA GGGGTGGAGT GTGGGAATGC AGAAGAGTCT CTAGGATCTC TTTGCTGACA
  ATGGGAGGCA TCAAAGTCTT CTGTTTCCAC AATACACGGC CTGGTTATTC TGTTTATGAA
  GATGATGGTA TATTGTACAC CCATAAATGA ATCAAGATTA TCTCGTTCTT TTCTTTAAAA
  W
  GTTTAGTCTA CAGTTATATG TGTATGTGCA TGTCTGTGTA AGTATTAGCA CTTCTCTGTA
  GTTCCTTTAC ATGCCATAAG AAGGTGTCAG ATGCCCTGAA CTTGATTGTA GGGAGCCTCA
  AGATATAGGT GCTAGAAACT AGACTTAGGT CTTTAGAAAG CACTTGTGTT TTTTCTTTTT
  TTGTTTGTTT TTGTTTTTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37867204	NES08664250	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27689475					SNP	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37867204	NES08664250	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6562575 () rs orientation: forward

Symbol	Name	Function Class
Rr588410	regulatory region 588410	381 bp distal
Rr588411	regulatory region 588411	811 bp distal