rs27689473 SNP Detail

Summary

• ID
  rs27689473
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:6563337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATGCCAT CTTCTCTGTG
  AGAACAATGA ATTAAACCCC TGAAACGTAA GCCAGCCCTG ATGAGATGTT TTCCTTTATA
  AGTGTGGCTG TGGTCATGCT GATTTTTCGC GGAAATAAAA CCCTAACTAA GCCACCTTGT
  CTGGAAAAAT AAAATGAAGC AAAATAAAAT AAAATATGAT GTAAAAATAA AATCGGCAAT
  R
  TATGTGATTT TAAATTCCAC TGCTGTAACT TTTATGCCAG TGCTCCACTG TGCTTCGTAC
  TGCCTTCCTC CCTTGTGAAG GTTCCCGGAC TCTGCCCACC TATTTCAGAT GGTAGTTACT
  TTCCTCAAGA ATGGGGGAAA AATAAAAGTC TTTAAGCTGT GCTGAACCAT CTTAAGCAAT
  TTCAGTTGTC TGTCCGTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37867202	NES08664213	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27689473					SNP	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37867202	NES08664213	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6563337 () rs orientation: forward

Symbol	Name	Function Class
Rr588410	regulatory region 588410	1143 bp distal
Rr588411	regulatory region 588411	1573 bp distal