rs27688636 SNP Detail

Summary

• ID
  rs27688636
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:10834602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCCCTAA TCCTTACTCA
  CGTTTTCTCT CATTCCTTAC TGCTTCATCC ACACTATTCA TGTCGTAGAC CATGTTCCTT
  CTAGAAAAAG TCTAATTTCA TAATCCATCT TGAAGCTGGT AAATGACATA ATCCCAACAG
  AACGTAAGTA AAACTGACTC AGCTTTGAGC TGAGTCCTCA GATCACAGAC TTTCACCTGT
  S
  TCTGTTTTCA GGTTTCTGTC AATGTATCCC TTCTGTGGCT GCCTCACAAA ACGTCCCCAT
  GCTGAGGTGA GGGCTTCGGG GCCCTCACAG CACTGACCTC CTGCTCAAGG ATGCTTAACA
  ACACTGTTCA CAAGCTATAA TCATATAAAA ACAAAAAATA GGACAGCGAA CCATTCATAT
  TTATGAATAT ACACAAACTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37851265	NES08649276	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27688636					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37851265	NES08649276	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:10834602 () rs orientation: forward

Symbol	Name	Function Class
Rr588806	regulatory region 588806	1009 bp proximal
Rr588807	regulatory region 588807	1093 bp proximal