rs27688630 SNP Detail

Summary

• ID
  rs27688630
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:10834953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAAAATA GGACAGCGAA
  CCATTCATAT TTATGAATAT ACACAAACTG TGTCTCCAGA CACTGAGGGG ATGGGAAGCT
  GCTGCCAGGT TGGAAGGAGT AGCACGGTTT ATCATAAGCC CATCTGAACA TCTCCGTGTG
  CATCACAGGA GTATATTCTC AAGCTAAGAA ACTGGGTCAG CAAGACAGCT TAGTGAGTAA
  Y
  GGGGCTTGCT GCCAATCCTG GTTATCCCAG GGACCCGCAC TGTTGAAGGA GAAAACCAAC
  TCACAAACGT AGTCCTCTAG TCCCCACACA GACACAGAGA CAGAGAGGCA GATGGGTTAG
  ATAAGCAAAT GCAATAATAA TAATTTTGTT TTAAATGTGA TTGCCTCAGC TTCGAAATCT
  GTTTTGGCTT TTGTATCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37851259	NES08649282	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27688630					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37851259	NES08649282	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:10834953 () rs orientation: forward

Symbol	Name	Function Class
Rr588806	regulatory region 588806	658 bp proximal
Rr588807	regulatory region 588807	742 bp proximal