rs27688622 SNP Detail

Summary

• ID
  rs27688622
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:10835932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAACTGA CAGGAATTTT
  TAAAACAGTG CTGTGGAAAA ATCCATATGC AAATGATGTT ATTGCATTGT TTACACATAT
  ACATACATGT GCCTTTCAAA TTGGGCATCA TTTTTGAATC TGTCCTACCC TGGTTATTAG
  CATACAGAGA ATGTCCTTAA GTCAGATAGG TGACAACCCA GTGTCAACAG AAGAAAGAGG
  Y
  GCTTCAAACT CCAGGCTGGC ATAGAAGAAG GGCCCCTCTA CAAAGAAGCA GTGTATTTAA
  AGTCTTCTTA AGAACTCCTA GGTCCTCAGC TTCAGCATCA GCCACAGGTC TTGGTTCTTT
  GTAGCTGGCT GTTGGGCCCT GCCTAGTGGG CTTTAAGACC ACCTAGGAAC CAGCCTTTTG
  GGACTTCCCA AGCTCGCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37851251	NES08649290	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27688622					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37851251	NES08649290	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:10835932 () rs orientation: forward

Symbol	Name	Function Class
Rr588806	regulatory region 588806	139 bp distal
Rr588807	regulatory region 588807	216 bp distal