rs27688611 SNP Detail

Summary

• ID
  rs27688611
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:10837073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTTCCCT TATGAATTCC
  CCCTTTCAAC AGGCAAACAA CTGTAGGAGG GACCACTGTG GATCTAAGGG GTTAATACAA
  CTGCCTTCAA CCAACTGACT TTTGTCTATC GACCAGTGGG AAATACCTTT TATTAGGCCT
  GTAGGGACTA AAAATTAAGG TTTCTGCTAA GGACTTTGGA CATATACACA AGGAGGCCCA
  R
  AGACTGCAGG GCTCCAGGTA TCCTGAATGA GTCTGCCCAC AGCCCTATTC CTGAAGGAAT
  CTATCCTATC AGACCTATCC TCGTGAATCT AACCTGCCTG CAGTGAATCA GGATGTTCAG
  GAAAAATTCA TCCTATCTCT ATGTTTTGGC CACAGCCTAA AGCTGAGATG ACAATGACAA
  AGTCATCCCT GCAGGACTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37851240	NES08649181	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27688611					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37851240	NES08649181	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:10837073 () rs orientation: forward

Symbol	Name	Function Class
Rr588806	regulatory region 588806	1280 bp distal
Rr588807	regulatory region 588807	1357 bp distal