rs27688610 SNP Detail

Summary

• ID
  rs27688610
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:10837085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATTCCCC CTTTCAACAG
  GCAAACAACT GTAGGAGGGA CCACTGTGGA TCTAAGGGGT TAATACAACT GCCTTCAACC
  AACTGACTTT TGTCTATCGA CCAGTGGGAA ATACCTTTTA TTAGGCCTGT AGGGACTAAA
  AATTAAGGTT TCTGCTAAGG ACTTTGGACA TATACACAAG GAGGCCCAGA GACTGCAGGG
  Y
  TCCAGGTATC CTGAATGAGT CTGCCCACAG CCCTATTCCT GAAGGAATCT ATCCTATCAG
  ACCTATCCTC GTGAATCTAA CCTGCCTGCA GTGAATCAGG ATGTTCAGGA AAAATTCATC
  CTATCTCTAT GTTTTGGCCA CAGCCTAAAG CTGAGATGAC AATGACAAAG TCATCCCTGC
  AGGACTTGCC AAGGTACATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37851239	NES08649182	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27688610					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37851239	NES08649182	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:10837085 () rs orientation: forward

Symbol	Name	Function Class
Rr588806	regulatory region 588806	1292 bp distal
Rr588807	regulatory region 588807	1369 bp distal