rs27688609 SNP Detail

Summary

• ID
  rs27688609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:10837138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGGTTAA TACAACTGCC
  TTCAACCAAC TGACTTTTGT CTATCGACCA GTGGGAAATA CCTTTTATTA GGCCTGTAGG
  GACTAAAAAT TAAGGTTTCT GCTAAGGACT TTGGACATAT ACACAAGGAG GCCCAGAGAC
  TGCAGGGCTC CAGGTATCCT GAATGAGTCT GCCCACAGCC CTATTCCTGA AGGAATCTAT
  Y
  CTATCAGACC TATCCTCGTG AATCTAACCT GCCTGCAGTG AATCAGGATG TTCAGGAAAA
  ATTCATCCTA TCTCTATGTT TTGGCCACAG CCTAAAGCTG AGATGACAAT GACAAAGTCA
  TCCCTGCAGG ACTTGCCAAG GTACATCCAA AGACACTGTT CTAACGGGAG CCTGCACTCA
  CCTCTTGACA ACCTAAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37851238	NES08649183	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27688609					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37851238	NES08649183	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:10837138 () rs orientation: forward

Symbol	Name	Function Class
Rr588806	regulatory region 588806	1345 bp distal
Rr588807	regulatory region 588807	1422 bp distal