rs27685226 SNP Detail

Summary

• ID
  rs27685226
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178071346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTGCACT GCAGAACGAT
  CCACTGGCTC TGAAATGAAC GCAAACTAAA TTCAGTCGTC GTTTACCGGG TTCTCTCTCT
  CTGCAGAGGG CACCCACCAA GCTGCTGCAC TGTTGGCGCC TTCGATGCAG GAGGATGATG
  AGTTACGATG ATCACAGCTG AGCACATACA TTCAGCTTTA GCTCTCGCTC TGAGAGCACA
  K
  GAAACTTACA AGGACTGCTG CCCATTCAGC CTGCTGAAAA CCGGTCATTA CTTTAGGCGA
  GATAAGGAGA TAATTCAAAT ATTAACTAAG GTGGTCAGAG TCCTAGTTCA GGTTTTGCTT
  GAAAACTTGC AACCTTGACA GGTGATGTCA TAGAATCCCA ATGCAATCCT TTCCCAGAAT
  CTAAGGCAAA AGGTCCAGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37848149	NES08698405	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27685226					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37848149	NES08698405	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178071346 () rs orientation: forward

Symbol	Name	Function Class
Cdh26	cadherin-like 26	978 bp upstream
Gm35532	predicted gene, 35532	within coordinates
Rr572404	regulatory region 572404	within coordinates
Rr572405	regulatory region 572405	1837 bp proximal