rs27685218 SNP Detail

Summary

• ID
  rs27685218
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:178072500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAGCCAC TTTTCTGTGT
  ACACACATAA CTTCGGTGCT TAGTATCCGA GCGCCCGCTT CCCTAGAGCC CTGTGGCCAC
  AGATGAGGTT ATACCTTACC CATCAGCCCA CCTTCTCTGA CAAACGAAAG CAGGGCAGGG
  AACAGAGAAC TCAGCAAGGT CAAGTGTCCA GGCTCAGGTA CCCAAGAGAG TGATTAGAAG
  Y
  GATGTCATTG GCTGGAGAGG AGATGCCTGG CTCCTGGTGA GGCCACCAGG CACCAAGGAC
  TGTTCTGTGC CCTCCCTAGC ATGGACACCA GAGGCTGTGC CTGGTTGCTG CTGCTGCTGT
  CATTACCGCA GGTGAGCTGA GCAGGAACTG GGGACTGTGC ACAGCATACA TGGGTTTTTA
  ATTTTCTAGG CTAAGAGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37848141	NES08698295	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27685218					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37848141	NES08698295	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178072500 () rs orientation: forward

Symbol	Name	Function Class
Cdh26	cadherin-like 26	mRNA-UTR
Gm35532	predicted gene, 35532	1082 bp upstream
Rr572404	regulatory region 572404	862 bp distal
Rr572405	regulatory region 572405	683 bp proximal
Rr572406	regulatory region 572406	1565 bp proximal