rs27685214 SNP Detail

Summary

• ID
  rs27685214
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:178072870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGTTTTT AATTTTCTAG
  GCTAAGAGAA TTTGGCAGGA CAACTTGAAC CTGGAGAGAA GCAGGCATTC AGTGGAGGCA
  GGGGGGTGAC TGTTTTTACA GTAATATAGG TGCACGGGGT TCCAGGATTT AGGTAAATGT
  GGGTTGAGAT CCGCATCTTA TGAGGGAGTG GGGAGCAGCT GAGGAACTTC GTACCGATTT
  R
  TGAAACACAC AGTTTCAAGT TAGATGTTGT CATTACAAAC ATTTCCCAGC AGCACCTCTG
  CCCCCATTTG AAAGGAACTG AGGGAATCTC AGTTCAAGAA ATCCTGTGTT AAAGACAACT
  GGAGCAAACC AGTGGGGTAC TAAATGACCC CATTGTAACC TGGAGGAGAA AAGCAGGGTC
  CCCAGTGGGC TAGTGGTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37848137	NES08698301	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27685214					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37848137	NES08698301	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178072870 () rs orientation: forward

Symbol	Name	Function Class
Cdh26	cadherin-like 26	Intron
Gm35532	predicted gene, 35532	1452 bp upstream
Rr572404	regulatory region 572404	1232 bp distal
Rr572405	regulatory region 572405	313 bp proximal
Rr572406	regulatory region 572406	1195 bp proximal