rs27685213 SNP Detail

Summary

• ID
  rs27685213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:178073020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCATCTTA TGAGGGAGTG
  GGGAGCAGCT GAGGAACTTC GTACCGATTT ATGAAACACA CAGTTTCAAG TTAGATGTTG
  TCATTACAAA CATTTCCCAG CAGCACCTCT GCCCCCATTT GAAAGGAACT GAGGGAATCT
  CAGTTCAAGA AATCCTGTGT TAAAGACAAC TGGAGCAAAC CAGTGGGGTA CTAAATGACC
  Y
  CATTGTAACC TGGAGGAGAA AAGCAGGGTC CCCAGTGGGC TAGTGGTGTC TTCAGCCTTC
  CTTTTGGTTT TCCTGGTCAC TGACTGAAGG GGGCTCCACA CTCACGAGTC ACTAGTAAGA
  CTTCTGCTGG GCCAGAGTCT TGGATGAACA CAGAATACAG CAGCAAGCAC AAGAGGGAGT
  TCTGTCTTGA CATGCGTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37848136	NES08698303	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27685213					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37848136	NES08698303	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178073020 () rs orientation: forward

Symbol	Name	Function Class
Cdh26	cadherin-like 26	Intron
Gm35532	predicted gene, 35532	1602 bp upstream
Rr572404	regulatory region 572404	1382 bp distal
Rr572405	regulatory region 572405	163 bp proximal
Rr572406	regulatory region 572406	1045 bp proximal