rs27685212 SNP Detail

Summary

• ID
  rs27685212
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:178073216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCCATTG TAACCTGGAG
  GAGAAAAGCA GGGTCCCCAG TGGGCTAGTG GTGTCTTCAG CCTTCCTTTT GGTTTTCCTG
  GTCACTGACT GAAGGGGGCT CCACACTCAC GAGTCACTAG TAAGACTTCT GCTGGGCCAG
  AGTCTTGGAT GAACACAGAA TACAGCAGCA AGCACAAGAG GGAGTTCTGT CTTGACATGC
  K
  TACACTCTAG CGGAGCCCCA TTTTCTGAAA GTGGATGCCT TGACTAGTAC CAGTCGCTTG
  GAGTTACAAG AATTATCTCC ATCGCCTTTT GCCGTGTCAA GAGTTGAGCT TTTAATCAAG
  GCATTAATCT CATCTATAGT GTTTTCTAGA ACCCTGTTTT ATTACCCAAT GTCAGCCTGG
  ATTTGAGAAT ATTGCAAACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37848135	NES08698305	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27685212					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37848135	NES08698305	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178073216 () rs orientation: forward

Symbol	Name	Function Class
Cdh26	cadherin-like 26	Intron
Gm35532	predicted gene, 35532	1798 bp upstream
Rr572404	regulatory region 572404	1578 bp distal
Rr572405	regulatory region 572405	12 bp distal
Rr572406	regulatory region 572406	849 bp proximal