rs27685208 SNP Detail

Summary

• ID
  rs27685208
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:178073630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTTCCTC GTACCTGCTT
  GCACCTACCC CCAACTTGTC TCTTCCGGAA ATGGCAACAT TCCCGCCCCT GTTGTGCTGG
  CACAGTGCCC AAGTGGTTAA TTCACCTCCC AGGGGAGGTC AGGATGGTGG GGGGCGGGGA
  ACGTCCTGAG GATTAGACCT CAGTGTTTGA CTGAAGGGAC TTTGCAGCCC CCGGGATTTA
  Y
  GATACTCAGG AGAAGGGTAT TCTGAAGAAT CTGGGGCTTT TAGCAAGGAC AACGAAGGGC
  CTTTTTCTTG GTGAAGAACC ACGCCCTCAG CAAGTACAGA ATCATTTTCT AAACTGGTCA
  GAAGGAACAC TCTGAGGATC CTCCAAATTC TGCTCTCAAG TCTGTGATAG GCATACCACC
  TCTCTGCGCA CACCTCATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37848131	NES08698312	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27685208					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37848131	NES08698312	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178073630 () rs orientation: forward

Symbol	Name	Function Class
Cdh26	cadherin-like 26	Intron
Rr572404	regulatory region 572404	1992 bp distal
Rr572405	regulatory region 572405	426 bp distal
Rr572406	regulatory region 572406	435 bp proximal
Rr572407	regulatory region 572407	1743 bp proximal