rs27685206 SNP Detail

Summary

• ID
  rs27685206
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:178073722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTTAATT CACCTCCCAG
  GGGAGGTCAG GATGGTGGGG GGCGGGGAAC GTCCTGAGGA TTAGACCTCA GTGTTTGACT
  GAAGGGACTT TGCAGCCCCC GGGATTTACG ATACTCAGGA GAAGGGTATT CTGAAGAATC
  TGGGGCTTTT AGCAAGGACA ACGAAGGGCC TTTTTCTTGG TGAAGAACCA CGCCCTCAGC
  R
  AGTACAGAAT CATTTTCTAA ACTGGTCAGA AGGAACACTC TGAGGATCCT CCAAATTCTG
  CTCTCAAGTC TGTGATAGGC ATACCACCTC TCTGCGCACA CCTCATCTCC ACAGAGACAG
  CCTGGTCTAC TGGGGGAATG TTGTGTGTAT TGGTTTCTCT CTGAACTCCA CCACACCCTT
  GCTCTGTTTT TTTTTTTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37848129	NES08698314	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27685206					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37848129	NES08698314	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178073722 () rs orientation: forward

Symbol	Name	Function Class
Cdh26	cadherin-like 26	Intron
Rr572405	regulatory region 572405	518 bp distal
Rr572406	regulatory region 572406	343 bp proximal
Rr572407	regulatory region 572407	1651 bp proximal