rs27684279 SNP Detail

Summary

• ID
  rs27684279
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178251066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTATAGGT TAGAAGCAAA
  CTGCCTTGAC TCAGGGGGTG TGGATGTGAT CCCACCTCCT CTTCTCTGCA GGTCACCTGC
  CTCCTCCAGA TCCCCTTCCT CAGGTGAAGA AAACAGGAAG CAGCCACTTC ACAGTGTCCT
  GAAGACCCCG TGGGAACCCA TCTGGAGCTG CGGGTACCAC TGAGATGTGA TGCTAGGTCA
  S
  CAGGAGACTG CTTCAGGTGT GAGCAGTCGC AACTTGTCTG ACAGGTATAA TTTTTTAGTG
  AATTGAAGAG TCAGGCTAGG GTATTTGTTG TTATTATTAT TATTATTGCT ATTATTATTT
  TATTTATTAT TATTGCTATT ATTATTATTA TTATTATTAT CACTATTAAG TGGAATGGGC
  TGGCTCTGAA CCTTTGATCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	NZW/LacJ	WSB/EiJ
ss37847109	NES08693599	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	NZW/LacJ	WSB/EiJ
rs27684279					SNP	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37847109	NES08693599	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178251066 () rs orientation: forward

Symbol	Name	Function Class
Gm74757	predicted gene, 74757	1508 bp upstream
Rr572434	regulatory region 572434	1776 bp distal
Rr572435	regulatory region 572435	1123 bp proximal