rs27684274 SNP Detail

Summary

• ID
  rs27684274
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178252793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACCTGGA AAGGCACTGA
  CCAGCAGGAA GGTAACAGAA GGCAGATGAG ACTTTCAATT TTTCTCACAG CCCTGCTGAA
  ACGAAGAGGC AAATTAATTT CGGTAATAAA GTTTACAAAC TGAGTATTTG CATAACACTT
  CACTTCAATT GCACTCGGAA ATACAAAGGG ATGAATATTT ATAGACATGG TTTGAGCGCA
  Y
  CGCTACATGG GACAGTGGAG GACTGGGTGA ATAGCCCTGA TCCTGATCTG AGGTTACTCA
  TTCCTGTTTG CTAAACACTA CCAAATTAGT GCTGGGAATG GTGGCAGAGA GACGCTGCAA
  ACCTGTACTT GCTGGGTGTA GAGGCACAAG GAAGCTCCTG TATGAACCTT ACGCATCTCA
  TGGAATATCA ACGTGCAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37847104	NES08693579	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27684274					SNP	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37847104	NES08693579	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178252793 () rs orientation: forward

Symbol	Name	Function Class
Gm74757	predicted gene, 74757	within coordinates
Rr572435	regulatory region 572435	209 bp distal