rs27679425 SNP Detail

Summary

• ID
  rs27679425
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:6344689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCAAACCT CCTCAAAGAA
  GCTTCTCTTT ATGGCGAATG GAAACCATCA CAGAACATCA TGTGTTTAAG GCATGTGAAT
  TGACTCACAT GAAATTAATA AATGGGGAAA TGATACAATG TGATACTATC AACACAGTTT
  GAGTCCTATG CATGGGATGT CCCCAGTGCA TCTCCCCCAT GTAATCAGTG ACAACCTTTG
  Y
  CCACAATTAC AGAAAAGGCT TCACCAATAC ACAAGCCCAT AAGAAAAGCT TAAGGTGGTG
  CCTTCCTTTA GTGTTAGTGT ATTCAAGAGT TGCTATGAGT CTCTTGATGG TTTTGTGATT
  GCTAAGGTGT GCTGACAGAT AAGGTAGCTG CCAGGAAACA AGGAAAAGTC AGAGAGAAGG
  AGGGGGGAAG AAGAGTCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37867747	NES08668653	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27679425					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37867747	NES08668653	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6344689 () rs orientation: forward

Symbol	Name	Function Class
Rr588371	regulatory region 588371	292 bp proximal