rs27679423 SNP Detail

Summary

• ID
  rs27679423
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:6344804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGTGATA CTATCAACAC
  AGTTTGAGTC CTATGCATGG GATGTCCCCA GTGCATCTCC CCCATGTAAT CAGTGACAAC
  CTTTGTCCAC AATTACAGAA AAGGCTTCAC CAATACACAA GCCCATAAGA AAAGCTTAAG
  GTGGTGCCTT CCTTTAGTGT TAGTGTATTC AAGAGTTGCT ATGAGTCTCT TGATGGTTTT
  R
  TGATTGCTAA GGTGTGCTGA CAGATAAGGT AGCTGCCAGG AAACAAGGAA AAGTCAGAGA
  GAAGGAGGGG GGAAGAAGAG TCCCTCTTGA TTTCAAAACA AGGTAGTAGT CCACTACTCA
  AGCTTTTAAT TTTTATAAAG CTGGTCTGTT AAAATACACA CACAGAACAC ACACACACAC
  ACCTTAAAAA TGTGGAGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37867745	NES08668657	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27679423					SNP	G	G	G	G	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37867745	NES08668657	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6344804 () rs orientation: forward

Symbol	Name	Function Class
Rr588371	regulatory region 588371	177 bp proximal