rs27679422 SNP Detail

Summary

• ID
  rs27679422
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:6344846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCCCAGT GCATCTCCCC
  CATGTAATCA GTGACAACCT TTGTCCACAA TTACAGAAAA GGCTTCACCA ATACACAAGC
  CCATAAGAAA AGCTTAAGGT GGTGCCTTCC TTTAGTGTTA GTGTATTCAA GAGTTGCTAT
  GAGTCTCTTG ATGGTTTTGT GATTGCTAAG GTGTGCTGAC AGATAAGGTA GCTGCCAGGA
  M
  ACAAGGAAAA GTCAGAGAGA AGGAGGGGGG AAGAAGAGTC CCTCTTGATT TCAAAACAAG
  GTAGTAGTCC ACTACTCAAG CTTTTAATTT TTATAAAGCT GGTCTGTTAA AATACACACA
  CAGAACACAC ACACACACAC CTTAAAAATG TGGAGACAAG TTCCTGCCTT CAAAGCCATC
  TCAGAGTAAG ACTGGGCAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37867744	NES08668659	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	C	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27679422					SNP	A	A	A	A	A	A	A	A	C	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37867744	NES08668659	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6344846 () rs orientation: forward

Symbol	Name	Function Class
Rr588371	regulatory region 588371	135 bp proximal