rs27679412 SNP Detail

Summary

• ID
  rs27679412
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:6346438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATCTAAA CCTTTCTCTT
  CCCCTTACAG TCTTTATTCC CTTCATTCCA CATACCCCAG GCACCTTATT AGAACTGCCT
  ACAGGAACAG TTCTTGAGCC CATCGTCCAC AGCTACACTA TAGAGAAGAA CAACATTTGA
  CCAGTAATCA GGCTCTTCAT CCTAAAGTAT TACAGTTCAC TTTAGGCTAG AGGAGATGCT
  R
  TGGTTGCCTT CTGGTCAGCC TGGGCAATAG GATCAGCAAA CAAGAGACCT GTCATCATAT
  CAGTACTGTA AAGGTACAAG CACAATCGTC AGACACAGGA AGGCACCTGA TGTAGTCAAC
  TTGTTAAGTA TTAGGGGGTT CTTCTTGCTC TTCTTCCAAC TAGGCTTATT GCAGTCACTA
  CTGTTTGGGG ATTGCCCGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37867734	NES08668564	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G		G	G	G	A	G	G	G	G	G
ss45717460	mCV22885963	ABI	CRAMUS_MOUSE	f	SNP		G	A				G
ss145960692	ENSMUSSNP4657084	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27679412					SNP	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37867734	NES08668564	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6346438 () rs orientation: forward

Symbol	Name	Function Class
Rr588371	regulatory region 588371	318 bp distal
Rr588372	regulatory region 588372	517 bp proximal
Rr588373	regulatory region 588373	1924 bp proximal