rs27679198 SNP Detail

Summary

• ID
  rs27679198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:179837834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGGGTAG GAAAGGAAGC
  AGTGAGCAGA CCCCACTCAC AGTTGGTACA GCTGGAAAGC TTGCCCTCTT CACGAACAGA
  GATCTGCCCA TTCACGCTGG TTGATCCACG GTTGACATAT CGGAAAACCA GCCGAAAGAG
  GTCAGGGGAG GTCACGTTCA GCCTGGCCAC AATCCTGGGC TATGGTGGTA CAAGACAACA
  R
  CGTCACTCCT CTGACCGTCA ACCTGAGTCC CCTGATCCCC AGGTGCTGCT TGCTCTGCTG
  GCCACCCCAG AGACCCAGCA GCTCCCATCT CTGCACCAAG CCCAGGGAGG GGGCAGCATG
  GTTCACCTGG ATAGCCATCA TGTGTGCGTA GCCTCTCCAG CTAAAGTTCT CAAACTCCAG
  GGGGTTGAAG CCAAAGCGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37837121	NES08676671	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27679198					SNP	G	G	G	G	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37837121	NES08676671	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179837834 () rs orientation: forward

Symbol	Name	Function Class
Lama5	laminin, alpha 5	Intron
Rr572663	regulatory region 572663	631 bp proximal