rs27679196 SNP Detail

Summary

• ID
  rs27679196
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:179838875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGGGGGTG GGGGGTGGGG GGGTGGGGGG GTTGGGCAGT
  GTATGAGCAC TTACTACGGC AGCCAAAGTA GTCAGCATAA TCCAGGCCAA AGAAGCCATC
  S
  TTGCAGGCTG CACAGGTCTT GCCACACACG TGAGCCTTGC AGAAGCACTG CCCATTGCCC
  TGGGGAAGAA CAGGAAGTGA GACTTGGTGA GGCAACACAC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37837119	NES08676673	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27679196					SNP	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37837119	NES08676673	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179838875 () rs orientation: forward

Symbol	Name	Function Class
Lama5	laminin, alpha 5	Coding-NonSynonymous
Rr572663	regulatory region 572663	226 bp distal