rs27679194 SNP Detail

Summary

• ID
  rs27679194
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:179839426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTGGCCC TTCCACGTGA
  GCCCGGCACA TACAGGGAGC CTGTGTCTGG GAGAGAGTAG GACTATGGGA AAGAAAAGGG
  CCGAAGCCCC TCACCCACCC TTACCCCATG CTTGGCATCC ACCCAGAATG GAAATAAAGG
  ACCAGCAGAA GAACAAATGG GCCCTGAGGT TGCCTCAGCA AACAAGCAGC AGCAGCAGCA
  R
  AAACCAGGGT CTCTCTGGGC TTCAGGTTTT AGGCGAGCTG GGTCTCCTAC CTAATCCTGC
  ACCATGGGCA AGCCTATGCT TACCTCAGGA AGGGCAGGAT TGGCTGGGGC CAGACCAGCA
  GGATGACAAG AGCCAGCTAT GGAAAGAGAA CCATGCTTTG ATCATTCCTT AGTGACAGGG
  CTTCCCCAAG GTCAAGGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss37837117	NES08676675	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs27679194					SNP	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37837117	NES08676675	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179839426 () rs orientation: forward

Symbol	Name	Function Class
Lama5	laminin, alpha 5	Intron
Rr572663	regulatory region 572663	777 bp distal