rs27679191 SNP Detail

Summary

• ID
  rs27679191
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:179840200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGCACAG ATCACACAAA
  CAGGACCACC CTCCTCTGCA CCACCCTAGC TCACCTTCAC AGTAGGGGAA GTTATAGGCG
  CCTGGTACAC ACATATCACA ATGTAGTCCT GTCACTCGGG GTCGACACCT ACACTGGCCG
  GTTGTCGGGT CACAGGTTGT ATGCAAGGAG CCATCGGCAG AGCAGTGGCA GGCTGTGTGT
  R
  AGAGATCAGT GGGTGGGCGC AAGGTAGGGC TACAAACTGC ACACCTCCAT CCTCCCAAGA
  AACTTACGGA TGCAGCTGGG GAAGCCGTAG AAGCCGGGGC TACATTCCTG ACAAGTGGCA
  CCTGTGTAGC CAGGACGGCA GTGGCACAAA CCGCCCACTC CACACTGCTG ATCCAGGGCC
  CCCCGAGGGT CACAGGCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ
ss37837113	NES08676679	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ
rs27679191					SNP	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37837113	NES08676679	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179840200 () rs orientation: forward

Symbol	Name	Function Class
Lama5	laminin, alpha 5	Intron
Rr572663	regulatory region 572663	1551 bp distal