rs27679083 SNP Detail

Summary

• ID
  rs27679083
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:179878717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACACACCC AGATGGCAGT
  TCCTCTTTGA TAGACTGAAG CCCTGGAGAG GTGGGTGCGG TTCCTCTGCA GTCCACCCAG
  GCTCCCTAGC TGGGAACCTC TTCTCATCTG GAAGGTGAAG TTCCCCGGAT TCTGAATCCC
  CCCCCCCCCC CCCCCCCCCG TTAACACTGC TGTAGGCTAA GCAGTGCCTG GGCCCTCAGT
  Y
  TCCTAGCTTC TGACTCTGAA GGAATGACTT CCACTTAGCC TCATTTTATT TTCCTGATCT
  GTACAATGGG ATCTGCCTGA TACTTTCTCT GGTGTGCTAG GAAAGAATAT TCTCAGGGTG
  ATACAGTGTC ACATGGAGAG AAAGTAAGGT GCCTTTTGAG ATAAGGGTGT GCTGTGCCAC
  TAGCCAATCC CGGCTGGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37837005	NES08690377	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27679083					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37837005	NES08690377	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179878717 () rs orientation: forward

Symbol	Name	Function Class
Gm75705	predicted gene, 75705	49 bp upstream
Rr374375	regulatory region 374375	within coordinates
Rr572682	regulatory region 572682	1250 bp distal
Rr572683	regulatory region 572683	175 bp distal
Rr572684	regulatory region 572684	within coordinates
Rr572685	regulatory region 572685	1148 bp proximal
Rr572686	regulatory region 572686	1682 bp proximal
Rr572687	regulatory region 572687	1719 bp proximal
Tssr22215	transcription start site region 22215	1774 bp downstream
Tssr28084	transcription start site region 28084	1926 bp upstream
Tssr28085	transcription start site region 28085	304 bp upstream