rs27679082 SNP Detail

Summary

• ID
  rs27679082
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:179878750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAAGCCC TGGAGAGGTG
  GGTGCGGTTC CTCTGCAGTC CACCCAGGCT CCCTAGCTGG GAACCTCTTC TCATCTGGAA
  GGTGAAGTTC CCCGGATTCT GAATCCCCCC CCCCCCCCCC CCCCCCGTTA ACACTGCTGT
  AGGCTAAGCA GTGCCTGGGC CCTCAGTTTC CTAGCTTCTG ACTCTGAAGG AATGACTTCC
  W
  CTTAGCCTCA TTTTATTTTC CTGATCTGTA CAATGGGATC TGCCTGATAC TTTCTCTGGT
  GTGCTAGGAA AGAATATTCT CAGGGTGATA CAGTGTCACA TGGAGAGAAA GTAAGGTGCC
  TTTTGAGATA AGGGTGTGCT GTGCCACTAG CCAATCCCGG CTGGCAAGCT CACTGGGGCT
  GGGAGTTCAC TTCGACTTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37837004	NES08690378	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27679082					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37837004	NES08690378	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179878750 () rs orientation: forward

Symbol	Name	Function Class
Gm75705	predicted gene, 75705	82 bp upstream
Rr374375	regulatory region 374375	within coordinates
Rr572682	regulatory region 572682	1283 bp distal
Rr572683	regulatory region 572683	208 bp distal
Rr572684	regulatory region 572684	within coordinates
Rr572685	regulatory region 572685	1115 bp proximal
Rr572686	regulatory region 572686	1649 bp proximal
Rr572687	regulatory region 572687	1686 bp proximal
Tssr22215	transcription start site region 22215	1807 bp downstream
Tssr28084	transcription start site region 28084	1959 bp upstream
Tssr28085	transcription start site region 28085	337 bp upstream