rs27679080 SNP Detail

Summary

• ID
  rs27679080
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:179879868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAACTAG CTGGGTGTGG
  TGGCCCGCGC CTTTATTCCC AGCACTTGGG AGGCAGAGGC AGGTGGATTT CTGAGTTCAA
  GGCCAGCCTG GTCTACAGAG TGAGTTCCAA GACAGCCAGG ACTATACAGA GAAACCCTGT
  CTCAAACAAA CAAACAAACA AACAAACAAA CAAACAAACC AAAAAACAAA ATAAATTGAA
  R
  GTGGCTTGAC AAAGCACAGC TGCGTGGGTA GTTGCCAAGA TCTGGAAGCC AAGCACAAGC
  AGCCACCAAT GGTGTCAGCC TTTCTTCCTT AACTCAAAGG GCACTTGGCC ATGCCTCACT
  GGCTGAATTC AACATCACAA TTTAGACCTG ATTGGCTGGT TTGAAATCTA GGAACAAAAT
  AAATCAAAGG GGTACAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37837002	NES08690293	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27679080					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37837002	NES08690293	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179879868 () rs orientation: forward

Symbol	Name	Function Class
Gm75705	predicted gene, 75705	1200 bp upstream
Rr374375	regulatory region 374375	within coordinates
Rr572683	regulatory region 572683	1326 bp distal
Rr572684	regulatory region 572684	710 bp distal
Rr572685	regulatory region 572685	within coordinates
Rr572686	regulatory region 572686	531 bp proximal
Rr572687	regulatory region 572687	568 bp proximal
Tssr28085	transcription start site region 28085	1455 bp upstream