rs27679078 SNP Detail

Summary

• ID
  rs27679078
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:179881097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATAATTA TAGATGTTGA
  TTATAAGATT ATAATTATAG ATTTATAAAC TGAGGTCATC ATTCCATTAT CCAAGCCATT
  GTTCCATGAA GTTGGTAAAT CAGTCATCTC TTCCTACAGT TCTGGCTGGT TTGTTGGTGA
  GAGCATCAAG CCCCTGGAGA GCCACGCTGA CGGTCTCATA CAGAACAACA TTGTTTGGAA
  S
  GAACAAGTGG CACTGTCTTC CTCACACACA GACTCTGCCT TTTCTAGCTA TAATCTTGTT
  AATCCTGAGC CATTTCTTTT CTTTCCTTTT TTTCCCCACA TGTGAGAGAT TTATTGGGAG
  AGAGAGAGAA AGAGAGGAAG GTGGCAGTAG AAGGAGGGGG GGGAAGGGAA GAGGAGCCAT
  TTCTTTAGGA CTAAGTTGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37837000	NES08724833	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27679078					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37837000	NES08724833	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179881097 () rs orientation: forward

Symbol	Name	Function Class
Rr374375	regulatory region 374375	134 bp downstream
Rr572684	regulatory region 572684	1939 bp distal
Rr572685	regulatory region 572685	1047 bp distal
Rr572686	regulatory region 572686	677 bp distal
Rr572687	regulatory region 572687	402 bp distal