rs27679075 SNP Detail

Summary

• ID
  rs27679075
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:179881805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGACTTG TCACTCTAAG
  CCACTGATAG GATTTCAAAT AAGGATCCTC TACAATTCAC TAGGTATCTC ATGGCGTGAC
  TGGTCATCTC TTCAGCACAT TGCCCAACAC TAAGCCCTAT TACATTGCCC ACAGGGTCAA
  TGATCTTCCC ACCTAGAGAA GCACGAGATG CGATTAGTCC TGGGGGTGGG AGCTCAGTGG
  Y
  AGCTAGGGCC TCACAGGAAA CAACAGGACT CATTGCTTTA GGCCCCTCAG TCTTGGAAGA
  GGAACATCAC ACAGTGCATG CCGTTTGGAT TGAAGGGCCA CCCCAACAGG AAGGGGACTA
  TTTGAGTCTC TGACCATCCA GTCACACACA AATAATAACC ACTTTTTTTT TTTTTCCGAG
  ACAGGGTTTC TCTGTGTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37836997	NES08690232	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27679075					SNP	T	T	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37836997	NES08690232	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179881805 () rs orientation: forward

Symbol	Name	Function Class
Rr374375	regulatory region 374375	842 bp downstream
Rr572685	regulatory region 572685	1755 bp distal
Rr572686	regulatory region 572686	1385 bp distal
Rr572687	regulatory region 572687	1110 bp distal