rs27679070 SNP Detail

Summary

• ID
  rs27679070
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:179882300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTACCAC TGCCCGGTAA
  AGGTCTGTCT TAAGTCTTAG GCTTCCAGTA TAGCTAGCTG AGGATATTGG TCAGTAGCAG
  ATAATTTTGG GGTCTAAGTG ATGGAACATT GGGAACAGGT TTGGACTTGA GCAAGGGAGT
  AGTAAGGATT TGTTAGAAGT AATCTGGGGG TAAGTGATCG CCCCTTTACC TGTTTTAGGG
  W
  AGATTTCCCT ATGGGCTCTG TCCTGGTCCC TAAGGTCTGA ATATTGAGGA TTCTTGGTGT
  GGGACATGCT GTTATGAGGC ATTTGGGTGA CAGTATTGAT GCAGACAGTT AGGAGCAGTG
  GGCATGTTTA TTACCTGTCA TTCCTCCATT AGGGCTTTCA TAGCATGTGG GGAGGGTGGC
  TTGTAAGTCC ACCCCTAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss37836992	NES08690174	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs27679070					SNP	T	T	T	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37836992	NES08690174	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179882300 () rs orientation: forward

Symbol	Name	Function Class
Rr374375	regulatory region 374375	1337 bp downstream
Rr572686	regulatory region 572686	1880 bp distal
Rr572687	regulatory region 572687	1605 bp distal