rs27677473 SNP Detail

Summary

• ID
  rs27677473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180946879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAATCCC AGCATTCGGG
  AGGCAGAGGC AGACGGATTT CTGAGTTGGA GGCCAGCCTG GTCTACAAAG TGAGTTCCAG
  GACAGCCAGG GCTACACAGA GAAACCCTGT CTCGAAAAAC CTAAATAAAT AAATAAATAA
  ATAAATAAAT AAATAGAGTT GCCATTAGAA GAAATCTAAG TCTCAGTTCC TTTTCTCCTT
  Y
  CCCTTCTGAG TCCCACAAAA CCCACTTGTG GGCACTGTAG AGTTCAGGTC CTGACTGTTG
  CTTCCTCTTG TGATTGAACT ATTTCCCCCA AGCCACTGCA ATGGCCAGTG TCCTCTGTTT
  CCTGGATAGG CTCTAGAAGA CCTTTCCTAG TGCCCTTAAG GGTTTTTCTT GCCTGATAGA
  GTGTGGGGGC ACCCATGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37832059	NES08691330	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27677473					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37832059	NES08691330	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180946879 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12921	CpG island 12921	1733 bp proximal
Rr572969	regulatory region 572969	1896 bp proximal
Stmn3	stathmin-like 3	1373 bp downstream
Tssr22300	transcription start site region 22300	1663 bp upstream