rs27677468 SNP Detail

Summary

• ID
  rs27677468
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180947713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCTCCTT TCTCATACCT
  GGCCATGCCT GCCAATAAGT GAGGCTAGAA TTCCAGGGTC CAGGAGTGTT CTTGGATAAA
  AGCACTTGAC AGGGGGAAGG GGCCAGGGTT CCCAGGGGCT ATAAAACCCC TGGATGGGGC
  AGGAGTATTG AGTGGCTCCA CAGAATGCCT CAGCCAATGC TTTACAAAGA GCATGTGCTT
  Y
  TGAGACAGTA GGTACAGTTG GAGCCTCTGC CTCCCGAGTG CTGGGATAAA AGGCGTGGGC
  CACCACGCCC GGCTGAGCAT GTACTTCTGC AACAGTAGGT ACAGTTGGAG GTATCCATGA
  TGAGCTCTCT GGACCACAGA CATTCACGGG CCCTTGGTGG AGAATACTTA CCCAGACCAG
  TTCAGGTGAG AAAATGCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37832054	NES08691335	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27677468					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37832054	NES08691335	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180947713 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12921	CpG island 12921	899 bp proximal
Rr572969	regulatory region 572969	1062 bp proximal
Rr572970	regulatory region 572970	1877 bp proximal
Stmn3	stathmin-like 3	539 bp downstream
Tssr22300	transcription start site region 22300	829 bp upstream