rs27677465 SNP Detail

Summary

• ID
  rs27677465
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180948118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCATTAT GCAATGACTA
  CAGGCTCTAA AATTGGCCCC GGGGGGGCCC TGGATTAGGT GAGCCCAGGA CTCCCATGAA
  ACCACATTAG AATGTTGTAA TCTCACTCTT CAGCTCTGCT AGCTCTGTTG CACAAAGGCT
  CCAGGGCTGA CCACAGTGAC AGAGTGGACC CAACCTGCTC TGGGGGTCCC CAGTCTTTCT
  Y
  TGCCCTCTAC AGAGTCTCTC CACGGTTTCC TATAAAATTT CAGGTAGATG CTGCTGTCTG
  ACCTGCAGAA GCTGAGAAGA CGAACTCTCA TGCAACCCAG TCTGGGAACC TGAATGAAAA
  GCCACACGTT TGTGCCACTG CCACTAGATT TATTAAGGTT GCCAACACAT CCACTAAGAG
  GGCCACTAAG AGAGCCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37832051	NES08691339	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27677465					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37832051	NES08691339	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180948118 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12921	CpG island 12921	494 bp proximal
Rr572969	regulatory region 572969	657 bp proximal
Rr572970	regulatory region 572970	1472 bp proximal
Stmn3	stathmin-like 3	134 bp downstream
Tssr22300	transcription start site region 22300	424 bp upstream