rs27676319 SNP Detail

Summary

• ID
  rs27676319
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:8604370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCGGATTC CCTAGAGCTG
  GAGTTACAGG CCGGTGTGAC CCGCTCAGTG TGAGTGTTGG GAATCAAGCT CAAGTCCTGT
  GGAGGAGCAG TAAGCTCTCT TAATCATTGA GCCATCTCTC CAGTCCTGTA GAGCTTGTGT
  ATAATGTTTC TTTACTGTTG TAATTTTGAG TAATATAAAC CAATTTTTCT ACTTTATATT
  Y
  CAGGCATTTA TTAACACAGC AAAAGAAATT TATGAAAAAA TCCAAGAAGG GGTCTTTGAC
  ATTAATAATG AGGTATGTAT ATGCAAATAT TGTTCACTAA ACACTAACTT TGAATTGACA
  TCTACCTAGT ATTTGGAGTC CTGATTTTAT TATTTATTTT TTATTTCTAA AATGGTTCAG
  TTGGTCATCC ATTGGCACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37859940	NES08659315	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27676319					SNP	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859940	NES08659315	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8604370 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rab2a	RAB2A, member RAS oncogene family			Intron
				Splice-Site
Rr588547	regulatory region 588547			1074 bp proximal