rs27676160 SNP Detail

Summary

• ID
  rs27676160
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:8684847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAACTGAG CCAAATTACT
  TGCGGTCCTG ACACAGGCCA TCTGCCTCAG GCATTATCAG CCAGTTTTTT CTGCCTGGTG
  AGTTCTCCAT CCCCTGCCAT CTGCAGCGTC CGGCAAGTCT TGGTTTAAAT GTCACATCTT
  TGGTGCTGTC TCTTCTGCCT ATCTGGGCAG AAGAAGAACG AATCTCTTTT GAGTCATCAG
  W
  GGCCCAAATG ATACCCCTAT TGCATACTTT TTGATTGCCA CGATATGCTT AGATGTCAGA
  TCCACCTCTC CATAGACTTA GGGAACCCAC TCATAATCGG GGTTTGTTTG TTTTGTTTTG
  TTTGGTTTGG TTGCTATTGT TTTGTTTTGT TTTCTGTTTG CATATCCAAC AGTGTGTGAG
  TCTCAGCGAG TATCTAGTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37859779	NES08656946	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27676160					SNP	T	T	T	T	T	A	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859779	NES08656946	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8684847 () rs orientation: forward

Symbol	Name	Function Class
Rr588556	regulatory region 588556	20 bp distal
Rr588557	regulatory region 588557	314 bp proximal