rs27675390 SNP Detail

Summary

• ID
  rs27675390
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:8072069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCACACCA TAGTTGCATG
  AGCTTATTCA TGTATCTCTA TCACACCTTA TCTTTATACT CAGGCCAATA TAATCTTTCA
  TATCCCTGGT ATAATGACCA AATAATTCCT AGTTTCCATT TAAGCTGAGA AGATATCCAA
  GGATTCCTAA CTGTGCTGGT ATCTCCTCAC CTACCTACAA GTGGCCCTAA AGCCCAGAGC
  Y
  TTGGTTACCA AGGTTACCAG CATCTTCTGA TTTATATTAT CATTTACTTA GCCCTACAGA
  TTTATCTAAC CCTTCTGTAA GTTACAGAAT TTCTAGTATG TGATTCCAAG AAACCATTAT
  GCTTTTAATC CCTCACATTG TCATGACTTG AAGCCATGTA TTGTTTGTGG ACATGGGGGT
  CATCTTGTAC ATGTAGACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37861912	NES08666272	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27675390					SNP	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37861912	NES08666272	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8072069 () rs orientation: forward

Symbol	Name	Function Class
Rr588489	regulatory region 588489	1051 bp proximal