rs27675385 SNP Detail

Summary

• ID
  rs27675385
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:8074504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGTTTGC TTTGCAACCA
  TGGGGATCTC AAATTGATCC CTAGAACAAT GCTTTAAAGG CAAAACAAAC AAATGAAAAA
  AACAGCTTTA ATTCCAGTGC GGCGGGTGGG TAGCTCCCTG AGGATCACAG TTTATCCTAT
  ACTGCAAACT CTAAGACAAT GAGATACCCT GTCATAAAAA CCCAGGAAAA TGATGCTTGA
  R
  TGACAGTACT CATGGTTGTC TGTGGCCTAC ACACAAAGCA AAAATTTAGA TAATGTTTCC
  ATTTGCAATA TGATATTAAT ATTAAAAATA CTGAAGATAA AAGGCTTACT CAAATATGCT
  AAGAATGGAT TCAGACTTAC AAAACGAATA GGAATATTAT TTGAGGTTCT AAAGTTCCCT
  ATTATTTAAA TTTATTGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37861907	NES08666096	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27675385					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37861907	NES08666096	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8074504 () rs orientation: forward

Symbol	Name	Function Class
Rr588489	regulatory region 588489	1033 bp distal