rs27675383 SNP Detail

Summary

• ID
  rs27675383
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:8074881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTATTATT TAAATTTATT
  GGTGAGAATT TCACTGTTAC TAAAACAACA TCATAGCATT CTTATTGTTG TGATAAAACA
  CTCTGACCAA AAGCAACTTG GGGAGCAGAG GGCTTATTTC AGTCCTAGAG CACAGATAAT
  CACCCAGAGG AACCAGGTCA AGAGCTCAAA TGGGGCAGGA ATTGAAGGCA AATCTTTAGG
  Y
  AGGAGTTGAT GCAGAGGCCA CAGAAGAGTG CTCCTTATTG GATTGCTCCC TGTGGCTTGC
  TCAGACTACT ACCCTCTTAT AGCACTCAGG ACCACGAGCC CAGGAGTGGC ACGTCCATGG
  TGACCTGGAC CCTCCCATAT CAATACTCAA TTAAGAAAAT GCCCCAGGAG ACAATCAAGT
  AGTGATATTC AATTCAATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37861905	NES08666102	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T		C	T	T	T	T	T	C
ss45680945	mCV25088002	ABI	CRAMUS_MOUSE	f	SNP	T	C				T		T
ss145973417	ENSMUSSNP4192856	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27675383					SNP	T	C	T	T	T	T	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37861905	NES08666102	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8074881 () rs orientation: forward

Symbol	Name	Function Class
Rr588489	regulatory region 588489	1410 bp distal