rs27675379 SNP Detail

Summary

• ID
  rs27675379
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:8075361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTTATAA ATTTACACAT
  ACAGGCACAT GTTACATAAT AGCATATCAG TCCATGTATG CACTCTTGTT GTAAAAGTAC
  TGAAAAGTTC TTGTTGCCTC TTATTTTTAC TGTACCTTTT CTGTTAATGT ATGATTAGAT
  ACACAATAAC TGCCATACTA TAATTACAAA GTCTGTATGT ATTTTGACCA TATTTGCCTC
  S
  TCAGTTCTTT CTCTACTTTA CATTTTTGCT TAATTCTTCA AGCTCACTGG TGCTGCCCAA
  GAATCACTAG ATGTGTGGTT GTTATGGGGA ACCAACCAGA GATGATCACT TAGGCACAGT
  TTATAGCCAA TTGAAAGTCT TTAATCTAGC CAGCTTGGGC TACACTGTGG TAGGTATTTG
  GGGCCTAACT GTAGCACTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37861901	NES08666108	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27675379					SNP	C	C	C	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37861901	NES08666108	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8075361 () rs orientation: forward

Symbol	Name	Function Class
Rr588489	regulatory region 588489	1890 bp distal