rs27673888 SNP Detail

Summary

• ID
  rs27673888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:6677875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTATCTA ATCCTGAATA
  TTGATTCTAA GCTGGTGCAT TAGCATCAGA GAGTGGCTGA ATCTCCAAAG TTGATGGTAA
  GGCTTAGATT GACCTCCTCT TATCTAATGG TGTCTGGATT CCTCCACAGG AATGCCTGGA
  GTGGCTATGA AACTGCAGGA GTATGCATAT CTTTTTAGAT TGAACATATT ACTTTGGTGG
  R
  AAATGGAGGC TGAGAATCTA CTAAAGTTTG AGACATGAAA TTTTAGTGTG GAATCCCTCT
  ATGGCACTTT CAGAGTCATA GATGTAGGCA TATAGCTTAC ATCTATGGAT AGTAGCTACA
  AATAATCTCA TGCCATCTAC CATGAGGGTG CATGGCTCTG CATCCAGCTG GAGGACTTTA
  AGAAGCTCAT TGAAGAGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37866911	NES08661867	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G		A	G	G	A	G	G	A	G	A
ss45599054	mCV23411123	ABI	CRAMUS_MOUSE	f	SNP		G	A				G		G
ss145963735	ENSMUSSNP5143154	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27673888					SNP	G	G	A	G	G	G	G	A	G	G	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37866911	NES08661867	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6677875 () rs orientation: forward

Symbol	Name	Function Class
Rr588413	regulatory region 588413	1256 bp proximal