rs27673886 SNP Detail

Summary

• ID
  rs27673886
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:6678151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATAGATGT AGGCATATAG
  CTTACATCTA TGGATAGTAG CTACAAATAA TCTCATGCCA TCTACCATGA GGGTGCATGG
  CTCTGCATCC AGCTGGAGGA CTTTAAGAAG CTCATTGAAG AGCATATTTT AAACCTAGTA
  GTCAGCAACA GGCTTAGATG CTGATATGGT CGGTCCACAT TGACCTCAAA TAATACCTCT
  M
  AGTCCTTAGT GCCCTTAGGC TTTCTGAGGG ATTTGGATAT AGTAGTCATG CTTTCAAGCC
  CAGCAATCAG GAGGCTGAGA CAGGAGGATT GCAGATTTGA GGCCAGCCTG CAACAGGTGA
  TTCATATTAA GATCTTGTCT CAGTCCCCAC ACATCCCCCA ACTGCATGAG CAGAATGTAA
  ATAACTCCTG GGATAATAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37866909	NES08661870	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27673886					SNP	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37866909	NES08661870	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6678151 () rs orientation: forward

Symbol	Name	Function Class
Rr588413	regulatory region 588413	980 bp proximal