rs27673877 SNP Detail

Summary

• ID
  rs27673877
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:6679509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAACTGA GGATGCCTTG
  AAGGTGAATG TTCTCAGAAG GAAAACAAGA ATTTTCTCAG GAAACTGACA AGTTATGAAA
  CGTTGCAGAT TCTGTCTTCT GCAAGGAAAA TAGATAAACA GGAAATGAAG GAAAGGAGAG
  GAAGGGTGGG AAGAAGCAGA GGAGGTAGCG AAGCGGGTGG ACAAGAGCAG AAGGGGAGAA
  R
  CAACGCTAGG GAGTAACTAA TCATGTGGTT GGCAGAGAGT CAGGGAGTTA GTGTTGAAAT
  CTCCTTTATT TTGCTTTGCT GAAACCATGT CCTGAAAGCA GGACGTGTTG GGAATGACCA
  CTCTCAGGCT GGGTGGAGAG CACGGTCCGT GCAGCACTTG TCTCGTGAGC CAAGTCTCTG
  AGTCTCTGAG TTTTGGATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss37866900	NES08661834	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A		G	A	A	A	A	G
ss45661351	mCV23411135	ABI	CRAMUS_MOUSE	f	SNP		G				A		A
ss145963742	ENSMUSSNP46556	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs27673877					SNP	A	G	A	A	A	A	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37866900	NES08661834	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6679509 () rs orientation: forward

Symbol	Name	Function Class
Rr588413	regulatory region 588413	within coordinates