rs27673589 SNP Detail

Summary

• ID
  rs27673589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9114111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTGAAGA ATTATTTCTT
  GTCTCTGCGC TTTGAGAGTT AATTATCCAT TTAAGTCATT CTACATTAAA AAAAAAAAAA
  AAAGCAAAAG AACAGAAGTC CTGGTGAGTT TCCATGAGTG TCTGTGGTGG GGAAGCCAGA
  AGGTGCTTTT TGAGTGCCAA GAAAGCATTA CGCAGTCTTC TGGATTGTCA TTTTTTATCA
  Y
  CGATGGCACA GGAGAACCTG GACTCTTTTA ACCTTCTGAA AAAGCTGCAT CATTTCCCCA
  GTAGACAATT TTGGAAACAC CCCAGCCCTT GGTAGGAAGC GCATTAAGGC ATAAGGACAC
  AGGAGCTGGC AGGACAGAGC CTTTGCCTAG GAATTCAGTT CTTAGGCATT AGGACTAGTT
  GAACCACGGT GTTCTGGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37857913	NES08664640	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27673589					SNP	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37857913	NES08664640	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9114111 () rs orientation: forward

Symbol	Name	Function Class
Gm54233	predicted gene, 54233	within coordinates
Rr588666	regulatory region 588666	1377 bp distal
Rr588667	regulatory region 588667	1744 bp proximal