rs27673588 SNP Detail

Summary

• ID
  rs27673588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9114354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGCATCA TTTCCCCAGT
  AGACAATTTT GGAAACACCC CAGCCCTTGG TAGGAAGCGC ATTAAGGCAT AAGGACACAG
  GAGCTGGCAG GACAGAGCCT TTGCCTAGGA ATTCAGTTCT TAGGCATTAG GACTAGTTGA
  ACCACGGTGT TCTGGTGTTC TCATGAGCGA AATGAAGCTG ACAGGCTGCT AGGTGTCTCT
  Y
  TCCAACATGG CTAAGCAAAA TGAGATGTCC TATGGAAAAT AATTAGTACA ATGTCTGGTA
  CCTGGTAAGG ACAAAAATGA TAGTTCTTAT CATCTTGACA GTTGGACTTA CTATGTGCAT
  CCATGCTTGT GTGTACAGGT ATGTGTGCCT CTGTGTATGT GTACATTCAT GCATGTGTTG
  GACTATGTCT CATAAAAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37857912	NES08664642	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27673588					SNP	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37857912	NES08664642	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9114354 () rs orientation: forward

Symbol	Name	Function Class
Gm54233	predicted gene, 54233	within coordinates
Rr588666	regulatory region 588666	1620 bp distal
Rr588667	regulatory region 588667	1501 bp proximal