rs27673585 SNP Detail

Summary

• ID
  rs27673585
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9115083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTGTACT TAGATTGGAA
  AAGTTGCCTC CTGGAAGAAG GCTGGGGACA TGGAGACATG GGAATGCAGC AGCAATAGGA
  ATAGCTGATA CAGTGAACGG TAAGGAATTG GAACTAAGAT GCTGCCGTGC CCATGGGGAG
  TGAGCACTTA ACCTTTGGCG CAGGTCTCCT CTGGGTTAAA TGCTAAAACC TCAGAAGAGA
  S
  CAAAGCCAGT CATAGTGGCG TGGTAGTCAC CTTTCCACTT GAGAGAGCTT ATAGAGGGGA
  AGGCTCATTT TGAATTCCAG GCTTGGAGGT TTCAGTTTAG GGCCATTTGG CATTTGGTCT
  CCTTTGGAGT CCCTGACTTC CCAATATGCA GAAGCACAGG TGGGTCCTCT CATGGCTGAG
  AGACCAACAA GAGAGGGAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37857909	NES08664648	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27673585					SNP	G	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37857909	NES08664648	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9115083 () rs orientation: forward

Symbol	Name	Function Class
Gm54233	predicted gene, 54233	within coordinates
Rr588667	regulatory region 588667	772 bp proximal